TF Dashboard

Toolbar: The toolbar contains a search bar, which can be used to search for specific loci by gene location or gene name. It also has useful tools for adding cursor guides, a center line, toggling track labels, downloading the current view, and adjusting the zoom level.
Genes: Gene annotations as provided in the genome. Click on an element to see additional details, such as the gene name, locus tag, and product description.
Published TUs: Transcriptional units.
Published TSS: Transcription start sites.
Published TFBS: Transcription factor binding sites.
Data Tracks: The y-axis of these plots is the number of ChIP reads mapped to the x-axis nucleotide. Replicate numbers and unique conditions (if applicable) are indicated by the track name. To download this data for custom analysis, click “Download bigWig Files” in the upper left corner of the pane.

Binding Site Table

Feature Visualization

Download PNG image Download SVG vector image Download PWM CSV

Genome Viewer Download bigWig files

proChIPdb is maintained by the Systems Biology Research Group at the University of California, San Diego.